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dc.contributor.authorvan Dam, Jesse
dc.contributor.authorKoehorst, Jasper J
dc.contributor.authorVik, Jon Olav
dc.contributor.authordos Santos, Vitor A.P. Martins
dc.contributor.authorSchaap, Peter J.
dc.contributor.authorSuarez-Diez, Maria
dc.date.accessioned2020-10-27T11:40:52Z
dc.date.available2020-10-27T11:40:52Z
dc.date.created2019-12-20T13:30:56Z
dc.date.issued2019
dc.identifier.citationScientific Data. 2019, 6 .en_US
dc.identifier.issn2052-4463
dc.identifier.urihttps://hdl.handle.net/11250/2685229
dc.description.abstractThe RDF data model facilitates integration of diverse data available in structured and semi-structured formats. To obtain a coherent RDF graph the chosen ontology must be consistently applied. However, addition of new diverse data causes the ontology to evolve, which could lead to accumulation of unintended erroneous composites. Thus, there is a need for a gate keeping system that compares the intended content described in the ontology with the actual content of the resource. The Empusa code generator facilitates creation of composite RDF resources from disparate sources. Empusa can convert a schema into an associated application programming interface (API), that can be used to perform data consistency checks and generates Markdown documentation to make persistent URLs resolvable. Using Empusa consistency is ensured within and between the ontology and the content of the resource. As an illustration of the potential of Empusa, we present the Genome Biology Ontology Language (GBOL). GBOL uses and extends current ontologies to provide a formal representation of genomic entities, along with their properties, relations and provenance.en_US
dc.description.abstractThe Empusa code generator and its application to GBOL, an extendable ontology for genome annotationen_US
dc.language.isoengen_US
dc.relation.urihttps://doi.org/10.1038/s41597-019-0263-7
dc.rightsNavngivelse 4.0 Internasjonal*
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/deed.no*
dc.subjectSystembiologien_US
dc.subjectSystems biologyen_US
dc.subjectOntologien_US
dc.subjectOntologyen_US
dc.titleThe Empusa code generator and its application to GBOL, an extendable ontology for genome annotationen_US
dc.typePeer revieweden_US
dc.typeJournal articleen_US
dc.description.versionpublishedVersionen_US
dc.subject.nsiVDP::Matematikk og naturvitenskap: 400en_US
dc.subject.nsiVDP::Mathematics and natural scienses: 400en_US
dc.source.pagenumber9en_US
dc.source.volume6en_US
dc.source.journalScientific Dataen_US
dc.identifier.doi10.1038/s41597-019-0263-7
dc.identifier.cristin1763368
dc.relation.projectNorges forskningsråd: 248792en_US
dc.relation.projectEU/634940 (MycoSynVac) og 730976 (IBISBA 1.0)en_US
dc.relation.projectAndre: Nederland: UNLOCK project (NRGWI.obrug.2018.005)en_US
dc.relation.projectEU/305340 (INFECT) og 635536 (EmPowerPutida)en_US
cristin.unitcode192,10,1,0
cristin.unitnameInstitutt for husdyr- og akvakulturvitenskap
cristin.ispublishedtrue
cristin.fulltextoriginal
cristin.qualitycode1


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Except where otherwise noted, this item's license is described as Navngivelse 4.0 Internasjonal