• MEMOTE for standardized genome-scale metabolic model testing 

      Lieven, Christian; Beber, Moritz E.; Olivier, Brett G.; Bergmann, Frank T.; Ataman, Meric; Babaei, Parizad; Bartell, Jennifer A.; Blank, Lars M.; Chauhan, Siddharth; Correia, Kevin; Diener, Christian; Dräger, Andreas; Ebert, Birgitta E.; Edirisinghe, Janaka E.; Faria, José P.; Feist, Adam M.; Fengos, Georgios; Fleming, Ronan M.T.; García-Jiménez, Beatriz; Hatzimanikatis, Vassily; Helvoirt, Wout van; Henry, Christopher S.; Hermjakob, Henning; Herrgård, Markus J.; Kaafarani, Ali; Kim, Hyun Uk; King, Zachary; Klamt, Steffen; Klipp, Edda; Koehorst, Jasper J; König, Matthias; Lakshmanan, Meiyappan; Lee, Dong-Yup; Lee, Sang Yup; Lee, Sunjae; Lewis, Nathan E.; Liu, Filipe; Ma, Hongwu; Moutinho Luz Machado, Carlos Daniel; Mahadevan, Radhakrishnan; Maia, Paulo; Mardinoglu, Adil; Medlock, Gregory L.; Monk, Jonathan M.; Nielsen, Jens; Nielsen, Lars Keld; Nogales, Juan; Nookaew, Intawat; Palsson, Bernhard O.; Papin, Jason A.; Patil, Kiran R.; Poolman, Mark; Price, Nathan D.; Resendis-Antonio, Osbaldo; Richelle, Anne; Rocha, Isabel; Sánchez, Benjamín J.; Schaap, Peter J.; Sheriff, Rahuman S. Malik; Shoaie, Saeed; Sonnenschein, Nikolaus; Teusink, Bas; Vilaça, Paulo; Vik, Jon Olav; Wodke, Judith A. H.; Xavier, Joana C.; Yuan, Qianqian; Zakhartsev, Maksim; Zhang, Cheng (Peer reviewed; Journal article, 2020)
    • Novel Extracellular Electron Transfer Channels in a Gram-Positive Thermophilic Bacterium 

      Gavrilov, Sergey; Zavarzina, Daria G.; Elizarov, Ivan M.; Tikhonova, Tamara V.; Dergousova, Natalia I.; Popov, Vladimir O.; Lloyd, Jonathan R.; Knight, David; El-Naggar, Mohamed Y.; Pirbadian, Sahand; Leung, Kar Man; Robb, Frank T.; Zakhartsev, Maksim; Bretschger, Orianna; Bonch-Osmolovskaya, Elizaveta A. (Peer reviewed; Journal article, 2020)
    • Reconstruction and modelling of amino acid synthesis in Salmo salar 

      Rotnes, Filip (Master thesis, 2018)
      This thesis documents the process behind the reconstruction of the Salmo Salar Amino Acid Synthesis model (SalSAA). The model is a mathematical description of amino acid biosynthesis and protein polymerisation in Atlantic ...
    • Sensitivity analysis of a pathway with respect to fast and small temperature change 

      Zakhartsev, Maksim; Ruoff, Peter (Peer reviewed; Journal article, 2019)