Browsing Brage NMBU by Author "Vik, Jon Olav"
Now showing items 1-20 of 27
-
A call for virtual experiments: Accelerating the scientific process
Cooper, Jonathan; Vik, Jon Olav; Waltemath, Dagmar (Journal article; Peer reviewed, 2015) -
A computational pipeline for quantification of mouse myocardial stiffness parameters
Nordbø, Øyvind; Lamata, P.; Land, Sander; Niederer, Steven A.; Aronsen, Jan Magnus; Louch, William Edward; Sjaastad, Ivar; Martens, Harald; Gjuvsland, Arne Bjørke; Tøndel, Kristin; Torp, Hans; Lohezic, M; Schneider, Jürgen; Remme, Espen W.; Smith, Nicolas P; Omholt, Stig W; Vik, Jon Olav (Journal article; Peer reviewed, 2014)The mouse is an important model for theoretical–experimental cardiac research, and biophysically based whole organ models of the mouse heart are now within reach. However, the passive material properties of mouse myocardium ... -
A stable core gut microbiota across fresh- to saltwater transition for farmed Atlantic salmon
Rudi, Knut; Angell, Inga Leena; Pope, Phillip; Vik, Jon Olav; Sandve, Simen Rød; Snipen, Lars-Gustav (Journal article; Peer reviewed, 2017) -
A systemic study of lipid metabolism regulation in salmon fingerlings and early juveniles fed plant oil
Jin, Yang; Olsen, Rolf Erik; Gillard, Gareth B.; Østensen, Mari-Ann; Korsvoll, Sven A.; Santi, Nina; Vik, Jon Olav; Sandve, Simen Rød; Olsen, Yngvar (Journal article; Peer reviewed, 2018) -
Characterisation of miRNA variation in Small RNA-Seq data
Moi, Frida (Master thesis, 2022)Evidence suggests that miRNA signatures could have clinical applications as biomarkers for diagnostic and prognostic purposes. In standard analyses, miRNAs are considered to exist as well-defined features with a precise ... -
Comparative transcriptomics reveals domestication‐associated features of Atlantic salmon lipid metabolism
Jin, Yang; Olsen, Rolf Erik; Harvey, Thomas Nelson; Østensen, Mari-Ann; Li, Keshuai; Santi, Nina; Vadstein, Olav; Bones, Atle M.; Vik, Jon Olav; Sandve, Simen Rød; Olsen, Yngvar (Peer reviewed; Journal article, 2020) -
Comparative transcriptomics reveals domestication‐associated features of Atlantic salmon lipid metabolism
Jin, Yang; Olsen, Rolf Erik; Harvey, Thomas Nelson; Østensen, Mari-Ann; Li, Keshuai; Santi, Nina; Vadstein, Olav; Bones, Atle M.; Vik, Jon Olav; Sandve, Simen Rød; Olsen, Yngvar (Peer reviewed; Journal article, 2020) -
CRISPR/Cas9-mediated ablation of elovl2 in Atlantic salmon (Salmo salar L.) inhibits elongation of polyunsaturated fatty acids and induces Srebp-1 and target genes
Winge, Per; Datsomor, Alex; Olsen, Rolf Erik; Jin, Yang; Vik, Jon Olav; Edvardsen, Rolf; Grammes, Fabian; Wargelius, Anna; Li, Keshuai (Journal article; Peer reviewed, 2019) -
Developing and validating tests for a metabolic model of Atlantic salmon (Salmo salar)
Ruud, Ingunn Marie Verne (Master thesis, 2020)The fish farming industry is expanding, and to achieve economic and ecological sustainability, new fish feeds are being developed. When developing new feeds, it can be useful to first simulate on a computer how the biological ... -
Diet and Life Stage-Associated Lipidome Remodeling in Atlantic Salmon
Jin, Yang; Harvey, Thomas Nelson; Bartosova, Zdenka; Hassani, Sahar; Bruheim, Per; Sandve, Simen Rød; Vik, Jon Olav (Peer reviewed; Journal article, 2021) -
Effect of regulatory architecture on broad versus narrow sense heritability
Wang, Yunpeng; Vik, Jon Olav; Omholt, Stig W; Gjuvsland, Arne Bjørke (Journal article; Peer reviewed, 2013) -
The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation
van Dam, Jesse; Koehorst, Jasper J; Vik, Jon Olav; dos Santos, Vitor A.P. Martins; Schaap, Peter J.; Suarez-Diez, Maria (Peer reviewed; Journal article, 2019)The RDF data model facilitates integration of diverse data available in structured and semi-structured formats. To obtain a coherent RDF graph the chosen ontology must be consistently applied. However, addition of new ... -
Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture
Macqueen, Daniel J.; Primmer, Craig R.; Houston, Ross D.; Nowak, Barbara F.; Bernatchez, Louis; Bergseth, Steinar; Davidson, William S.; Gallardo-Escárate, Cristian; Goldammer, Tom; Guiguen, Yann; Iturra, Patricia; Kijas, James W.; Koop, Ben F.; Lien, Sigbjørn; Maass, Alejandro; Martin, Samuel A. M.; McGinnity, Philip; Montecino, Martin; Naish, Kerry; Nichols, Krista M.; Ólafsson, Kristinn; Omholt, Stig William; Palti, Yniv; Plastow, Graham S.; Rexroad, Caird E. 3rd; Rise, Matthew L.; Ritchie, Rachael J.; Sandve, Simen Rød; Schulte, Patricia M.; Tello, Alfredo; Vidal, Rodrigo; Vik, Jon Olav; Wargelius, Anna; Yáñez, José Manuel (Journal article; Peer reviewed, 2017)We describe an emerging initiative - the ‘Functional Annotation of All Salmonid Genomes’ (FAASG), which will leverage the extensive trait diversity that has evolved since a whole genome duplication event in the salmonid ... -
Hierarchical multivariate regression-based sensitivity analysis reveals complex parameter interaction patterns in dynamic models
Tøndel, Kristin; Vik, Jon Olav; Martens, Harald; Indahl, Ulf Geir; Smith, Nic; Omholt, Stig W (Journal article; Peer reviewed, 2013) -
Life-stage associated remodeling of lipid metabolism regulation in Atlantic salmon
Gillard, Gareth Benjamin; Harvey, Thomas Nelson; Gjuvsland, Arne Bjørke; Jin, Yang; Thomassen, Magny Sissel S.; Lien, Sigbjørn; Leaver, Michael; Torgersen, Jacob Seilø; Hvidsten, Torgeir Rhoden; Vik, Jon Olav; Sandve, Simen Rød (Journal article; Peer reviewed, 2018) -
Linking the heritability concept to systems dynamics
Wang, Yunpeng (PhD Thesis;2013:18, Doctoral thesis, 2013)The concept of heritability is rooted in the observation that relatives resemble one another more than expected by chance. Narrow-sense heritability is defined as the proportion of phenotypic variance that is attributable ... -
Liver slice culture as a model for lipid metabolism in fish
Harvey, Thomas Nelson; Sandve, Simen Rød; Jin, Yang; Vik, Jon Olav; Torgersen, Jacob Seilø (Peer reviewed; Journal article, 2019) -
MEMOTE for standardized genome-scale metabolic model testing
Lieven, Christian; Beber, Moritz E.; Olivier, Brett G.; Bergmann, Frank T.; Ataman, Meric; Babaei, Parizad; Bartell, Jennifer A.; Blank, Lars M.; Chauhan, Siddharth; Correia, Kevin; Diener, Christian; Dräger, Andreas; Ebert, Birgitta E.; Edirisinghe, Janaka E.; Faria, José P.; Feist, Adam M.; Fengos, Georgios; Fleming, Ronan M.T.; García-Jiménez, Beatriz; Hatzimanikatis, Vassily; Helvoirt, Wout van; Henry, Christopher S.; Hermjakob, Henning; Herrgård, Markus J.; Kaafarani, Ali; Kim, Hyun Uk; King, Zachary; Klamt, Steffen; Klipp, Edda; Koehorst, Jasper J; König, Matthias; Lakshmanan, Meiyappan; Lee, Dong-Yup; Lee, Sang Yup; Lee, Sunjae; Lewis, Nathan E.; Liu, Filipe; Ma, Hongwu; Moutinho Luz Machado, Carlos Daniel; Mahadevan, Radhakrishnan; Maia, Paulo; Mardinoglu, Adil; Medlock, Gregory L.; Monk, Jonathan M.; Nielsen, Jens; Nielsen, Lars Keld; Nogales, Juan; Nookaew, Intawat; Palsson, Bernhard O.; Papin, Jason A.; Patil, Kiran R.; Poolman, Mark; Price, Nathan D.; Resendis-Antonio, Osbaldo; Richelle, Anne; Rocha, Isabel; Sánchez, Benjamín J.; Schaap, Peter J.; Sheriff, Rahuman S. Malik; Shoaie, Saeed; Sonnenschein, Nikolaus; Teusink, Bas; Vilaça, Paulo; Vik, Jon Olav; Wodke, Judith A. H.; Xavier, Joana C.; Yuan, Qianqian; Zakhartsev, Maksim; Zhang, Cheng (Peer reviewed; Journal article, 2020) -
Model-based integration of omics data for context-specific analysis of Atlantic salmon metabolism
Molversmyr, Håvard (Master thesis, 2021)Metabolism is the set of biochemical reactions that occur within a living organism in or- der to maintain life and grow. Most of these reactions are catalysed by enzymes which are coded for by genes. Using existing ... -
Reconstruction and modelling of amino acid synthesis in Salmo salar
Rotnes, Filip (Master thesis, 2018)This thesis documents the process behind the reconstruction of the Salmo Salar Amino Acid Synthesis model (SalSAA). The model is a mathematical description of amino acid biosynthesis and protein polymerisation in Atlantic ...