• Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication 

      Gillard, Gareth Benjamin; Grønvold, Lars; Røsæg, Line Lieblein; Holen, Matilde Mengkrog; Monsen, Øystein; Koop, Ben F.; Rondeau, Eric B.; Gundappa, Manu Kumar; Mendoza, John; Macqueen, Daniel J.; Rohlfs, Rori V.; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden (Peer reviewed; Journal article, 2021)
    • From FAANG to fork: application of highly annotated genomes to improve farmed animal production 

      Clark, Emily L; Archibald, Alan L.; Daetwyler, Hans D.; Groenen, Martien A. M.; Harrison, Peter W.; Houston, Ross D.; Kühn, Christa; Lien, Sigbjørn; Macqueen, Daniel J.; Reecy, James M.; Robledo, Diego; Watson, Mick; Tuggle, Christopher K.; Giuffra, Elisabetta (Peer reviewed; Journal article, 2020)
    • Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture 

      Macqueen, Daniel J.; Primmer, Craig R.; Houston, Ross D.; Nowak, Barbara F.; Bernatchez, Louis; Bergseth, Steinar; Davidson, William S.; Gallardo-Escárate, Cristian; Goldammer, Tom; Guiguen, Yann; Iturra, Patricia; Kijas, James W.; Koop, Ben F.; Lien, Sigbjørn; Maass, Alejandro; Martin, Samuel A. M.; McGinnity, Philip; Montecino, Martin; Naish, Kerry; Nichols, Krista M.; Ólafsson, Kristinn; Omholt, Stig William; Palti, Yniv; Plastow, Graham S.; Rexroad, Caird E. 3rd; Rise, Matthew L.; Ritchie, Rachael J.; Sandve, Simen Rød; Schulte, Patricia M.; Tello, Alfredo; Vidal, Rodrigo; Vik, Jon Olav; Wargelius, Anna; Yáñez, José Manuel (Journal article; Peer reviewed, 2017)
      We describe an emerging initiative - the ‘Functional Annotation of All Salmonid Genomes’ (FAASG), which will leverage the extensive trait diversity that has evolved since a whole genome duplication event in the salmonid ...
    • SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes 

      Mulugeta, Teshome Dagne; Nome, Torfinn; To, Thu-Hien; Gundappa, Manu Kumar; Macqueen, Daniel J.; Våge, Dag Inge; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden (Journal article; Peer reviewed, 2019)
    • The structural variation landscape in 492 Atlantic salmon genomes 

      Bertolotti, Alicia C.; Layer, Ryan M.; Gundappa, Manu Kumar; Gallagher, Michael D.; Pehlivanoglu, Ege; Nome, Torfinn; Robledo, Diego; Kent, Matthew Peter; Røsæg, Line Lieblein; Holen, Matilde Mengkrog; Mulugeta, Teshome Dagne; Ashton, Thomas J.; Hindar, Kjetil; Sægrov, Harald; Florø-Larsen, Bjørn; Erkinaro, Jaakko; Primmer, Craig R.; Bernatchez, Louis; Martin, Samuel A.M.; Johnston, Ian A.; Sandve, Simen Rød; Lien, Sigbjørn; Macqueen, Daniel J. (Peer reviewed; Journal article, 2020)
      Structural variants (SVs) are a major source of genetic and phenotypic variation, but remain challenging to accurately type and are hence poorly characterized in most species. We present an approach for reliable SV discovery ...