Browsing Brage NMBU by Author "Lien, Sigbjørn"
Now showing items 1-20 of 83
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A 200K SNP chip reveals a novel Pacific salmon louse genotype linked to differential efficacy of emamectin benzoate
Messmer, Amber; Leong, Jong S; Rondeau, Eric; Mueller, Anita; Despins, Cody A; Minkley, David R.; Kent, Matthew Peter; Lien, Sigbjørn; Boyce, Brad; Morrison, Diane; Fast, Mark; Norman, Joseph D; Danzmann, Roy G.; Koop, Ben F (Journal article; Peer reviewed, 2018) -
A ddRAD based linkage map of the cultivated Strawberry, Fragaria xananassa
Davik, Jahn; Sargent, Daniel J.; Brurberg, May Bente; Lien, Sigbjørn; Kent, Matthew Peter; Alsheikh, Muath K (Journal article; Peer reviewed, 2015) -
A genetic linkage map for the salmon louse (Lepeophtheirus salmonis): evidence for high male:female and inter-familial recombination rate differences
Danzmann, Roy G.; Norman, Joseph D; Rondeau, Eric; Messmer, Amber; Kent, Matthew Peter; Lien, Sigbjørn; Igboeli, Okechukwu; Fast, Mark; Koop, Ben F (Journal article; Peer reviewed, 2018) -
A genetic linkage map for the salmon louse (Lepeophtheirus salmonis): evidence for high male:female and inter-familial recombination rate differences.
Danzmann, R. G.; Norman, J.D.; Rondeau, E.B.; Messmer, A.M.; Kent, Matthew Peter; Lien, Sigbjørn; Igboeli, O.; Koop, BF (Journal article; Peer reviewed, 2018) -
A genome scan for selection signatures comparing farmed Atlantic salmon with two wild populations: Testing colocalization among outlier markers, candidate genes, and quantitative trait loci for production traits
Liu, Lei; Ang, Keng Pee; Elliott, Jake A.K.; Kent, Matthew Peter; Lien, Sigbjørn; MacDonald, Danielle; Boulding, Elizabeth Grace (Journal article; Peer reviewed, 2017) -
A genome-wide association study, supported by a new chromosome-level genome assembly, suggests sox2 as a main driver of the undifferentiatiated ZZ/ZW sex determination of turbot (Scophthalmus maximus)
Martínez, Paulino; Robledo, Diego; Taboada, Xoana; Blanco, Andrés; Moser, Michel; Maroso, Francesco; Hermida, Miguel; Gómez-Tato, Antonio; Álvarez-Blázquez, Blanca; Cabaleiro, Santiago; Piferrer, Francesc; Bouza, Carmen; Lien, Sigbjørn; Viñas, Ana M. (Peer reviewed; Journal article, 2021) -
A Nanopore Based Chromosome-Level Assembly Representing Atlantic Cod from the Celtic Sea
Kirubakaran, Tina Graceline; Andersen, Øivind; Moser, Michel; Arnyasi, Mariann; McGinnity, Philip; Lien, Sigbjørn; Kent, Matthew Peter (Peer reviewed; Journal article, 2020) -
A new single nucleotide polymorphism database for rainbow trout generated through whole genome resequencing
Gao, Guangtu; Nome, Torfinn; Pearse, Devon E; Moen, Thomas; Naish, Kerry A; Thorgaard, Gary H; Lien, Sigbjørn; Palti, Yniv (Journal article; Peer reviewed, 2018) -
A new single nucleotide polymorphism database for rainbow trout generated through whole genome resequencing
Gao, Guangtu; Nome, Torfinn; Pearse, Devon E; Moen, Thomas; Naish, Kerry A; Thorgaard, Gary H; Lien, Sigbjørn; Palti, Yniv (Journal article; Peer reviewed, 2018) -
Adaptation to low salinity promotes genomic divergence in Atlantic Cod (Gadus morhua L.)
Berg, Paul Ragnar; Jentoft, Sissel; Star, Bastian; Ring, Kristoffer Hofaker; Knutsen, Halvor; Lien, Sigbjørn; Jakobsen, Ketil; Andre, Carl (Journal article; Peer reviewed, 2015) -
Adaptation to Low Salinity Promotes Genomic Divergence in Atlantic Cod (Gadus morhua L.)
Berg, Paul Ragnar; Jentoft, Sissel; Star, Bastiaan; Ring, Kristoffer Hofaker; Knutsen, Halvor; Lien, Sigbjørn; Jakobsen, Kjetill Sigurd; Andre, Carl (Journal article; Peer reviewed, 2015) -
An improved genome assembly uncovers prolific tandem repeats in Atlantic cod
Tørresen, Ole Kristian; Star, Bastiaan; Jentoft, Sissel; Reinar, William Brynildsen; Grove, Harald; Miller, Jason R.; Walenz, Brian; Knight, James; Ekholm, Jenny M.; Peluso, Paul; Edvardsen, Rolf; Tooming-Klunderud, Ave; Skage, Morten; Lien, Sigbjørn; Jakobsen, Kjetill Sigurd; Nederbragt, Alexander Johan (Journal article; Peer reviewed, 2017) -
Beyond large-effect loci: Large-scale GWAS reveals a mixed large-effect and polygenic architecture for age at maturity of Atlantic salmon
Sinclair-Waters, Marion; Ødegård, Jørgen; Korsvoll, Sven Arild; Moen, Thomas; Lien, Sigbjørn; Primmer, Craig R.; Barson, Nicola (Peer reviewed; Journal article, 2020)Background. Understanding genetic architecture is essential for determining how traits will change in response to evolutionary processes such as selection, genetic drift and/or gene flow. In Atlantic salmon, age at maturity ... -
Characterization of a male specific region containing a candidate sex determining gene in Atlantic cod
Kirubakaran, Tina Graceline; Andersen, Øivind; De Rosa, Maria Cristina; Andersstuen, Terese; Vagonyte-Hallan, Kristina; Kent, Matthew Peter; Lien, Sigbjørn (Journal article; Peer reviewed, 2019)The genetic mechanisms determining sex in teleost fishes are highly variable and the master sex determining gene has only been identified in few species. Here we characterize a male-specific region of 9 kb on linkage group ... -
Characterization of genes and gene products influencing carotenoid metabolism in Atlantic salmon
Zoric, Nina (PhD Thesis;2017:36, Doctoral thesis, 2017)Distinct red flesh color is a unique trait of the fish genera Oncorhynchus, Salvelinus, Salmo and Parahucho. In this thesis we have investigated its molecular basis in Atlantic salmon to better understand how and why it ... -
Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes
Conte, Matthew A.; Joshi, Rajesh; Moore, Emily C.; Nandamuri, Sri Pratima; Gammerdinger, William J.; Roberts, Reade B.; Carleton, Karen L.; Lien, Sigbjørn; Kocher, Thomas D. (Peer reviewed; Journal article, 2019) -
Controlling for P-value inflation in allele frequency change in experimental evolution and artificial selection experiments
Kemppainen, Petri; Rønning, Bernt; Kvalnes, Thomas; Hagen, Ingerid Julie; Ringsby, Thor Harald; Billing, Anna Maria; Pärn, Henrik; Lien, Sigbjørn; Husby, Arild; Sæther, Bernt-Erik; Jensen, Henrik (Journal article; Peer reviewed, 2017) -
Detection and genotyping of Atlantic salmon structural variants with genome graphs
Kjelstrup, Anna Sofie (Master thesis, 2022)Structural variants (SVs) are defined as genomic rearrangements of 50 base pairs (bp) or larger. Although they are less frequent in the genome, they can account for ten folds more variable base pairs than the widely studied ... -
Development and Validation of 58K SNP-Array and High-Density Linkage Map in Nile Tilapia (O. niloticus)
Joshi, Rajesh; Arnyasi, Mariann; Lien, Sigbjørn; Gjøen, Hans Magnus; Alvarez, Alejandro Tola; Kent, Matthew Peter (Journal article; Peer reviewed, 2018) -
Dissecting the loci underlying maturation timing in Atlantic salmon using haplotype and multi-SNP based association methods
Sinclair-Waters, Marion; Nome, Torfinn; Wang, Jing; Lien, Sigbjørn; Kent, Matthew Peter; Sægrov, Harald; Florø-Larsen, Bjørn; Bolstad, Geir Hysing; Primmer, Craig R. (Journal article; Peer reviewed, 2022)Characterizing the role of different mutational effect sizes in the evolution of fitness-related traits has been a major goal in volutionary biology for a century. Such characterization in a diversity of systems, both model ...