Browsing Brage NMBU by Author "Hvidsten, Torgeir Rhoden"
Now showing items 1-20 of 35
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A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees
Obudulu, Ogonna; Mähler, Niklas; Skotare, Tomas; Bygdell, Joakim; Abreu, Ilka N.; Ahnlund, Maria; Gandla, Madhavi Latha; Petterle, Anna; Moritz, Thomas; Hvidsten, Torgeir Rhoden; Jönsson, Leif J.; Wingsle, Gunnar; Trygg, Johan; Tuominen, Hannele (Journal article; Peer reviewed, 2018) -
Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication
Gillard, Gareth Benjamin; Grønvold, Lars; Røsæg, Line Lieblein; Holen, Matilde Mengkrog; Monsen, Øystein; Koop, Ben F.; Rondeau, Eric B.; Gundappa, Manu Kumar; Mendoza, John; Macqueen, Daniel J.; Rohlfs, Rori V.; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden (Peer reviewed; Journal article, 2021) -
Comparison between gene expression and protein abundance in Populus tremula wood development
Broen, Eivind Kjeka (Master thesis, 2019)This thesis compares the gene expression and protein abundance across a series spanning the wood forming developmental stages in Populus tremula (common aspen): phloem, cambium and xylem. The comparison was based on two ... -
ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa
Netotea, Sergiu; Sundell, David; Street, Nathaniel; Hvidsten, Torgeir Rhoden (Journal article; Peer reviewed, 2014) -
Deciphering transcriptional regulation using deep neural networks
Førrisdal, Julie Wollebæk (Master thesis, 2023)The DNA holds the recipe of all life functions. To decipher the instructions, one has to learn and understand its complex syntax. The non-coding DNA contains regulatory elements, that are essential to control and activate ... -
Developing a workflow for the multi-omics analysis of Daphnia
Lai, Wanxin (Master thesis, 2021)In the era of multi-omics, making reasonable statistical inferences through data integration is challenged by data heterogeneity, dimensionality constraints, and data harmonization. The biological system is presumed to ... -
Evaluation of machine learning methods to decode transcriptional regulation
Jeyakumar, Harini (Master thesis, 2023)With large biological measurements made possible by the development of high-throughput technology, it allows for the study of genomic data. In transcriptional regulation the cell controls the translation of DNA to RNA, and ... -
Evolution of cold acclimation and its role in niche transition in the temperate grass subfamily Pooideae
Schubert, Marian; Grønvold, Lars; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden; Fjellheim, Siri (Peer reviewed; Journal article, 2019) -
Evolution of flowering adaptations in temperate grasses
Paliocha, Martin (PhD Thesis;2023:64, Doctoral thesis, 2023)Grasses (Poaceae) represent an unparalleled evolutionary success story and are particularly well adapted to the environmental challenges posed by temperate habitats. Crucial to their evolutionary success in temperate ... -
Evolution of gene expression following the whole genome duplication in salmonid fish
Gillard, Gareth Benjamin (PhD Thesis;2019:53, Doctoral thesis, 2019)Whole genome duplication (WGD) is a rare mutational event that provides additional duplicates of all genes in the entire genome, resulting in functional redundancy. This redundancy leads to relaxation of selective constraints ... -
Exploring host-microbiome interactions in Norwegian Salmon via weighted network analysis
Strand, Marius André (Master thesis, 2019)Invisible to the naked eye, but present everywhere. Microbial organisms live and reproduce in almost any conceivable environment on the planet. In recent years, researchers have started to gain quantified information of ... -
Extracting functional trends from whole genome duplication events using comparative genomics
Hermansen, Russell A.; Hvidsten, Torgeir Rhoden; Sandve, Simen Rød; Liberles, David A. (Journal article; Peer reviewed, 2016) -
Gene co-expression network connectivity is an important determinant of selective constraint
Mähler, Niklas; Wang, Jing; Terebieniec, B; Ingvarsson, Pär K.; Street, Nathaniel R.; Hvidsten, Torgeir Rhoden (Journal article; Peer reviewed, 2017) -
Gene regulation and the emergence of phenotypes – a network approach
Mähler, Niklas (PhD Thesis;2016:52, Doctoral thesis, 2018-05-03)The emergence of complex traits in living organisms has been of interest to biologists since the early days of biology. Domestication and breeding has resulted in the most remarkable transformations, such as the grass ... -
The grayling genome reveals selection on gene expression regulation after whole-genome duplication
Varadharajan, Srinidhi; Sandve, Simen Rød; Gillard, Gareth Benjamin; Tørresen, Ole K.; Mulugeta, Teshome Dagne; Hvidsten, Torgeir Rhoden; Lien, Sigbjørn; Vøllestad, Leif Asbjørn; Jentoft, Sissel; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd (Peer reviewed; Journal article, 2018)Whole-genome duplication (WGD) has been a major evolutionary driver of increased genomic complexity in vertebrates. One such event occurred in the salmonid family ∼80 Ma (Ss4R) giving rise to a plethora of structural and ... -
Homeolog regulation in hexaploid wheat
Hallsberg, Ine Birgitta (Master thesis, 2016-09-15)Bread wheat (Triticum aestivum L.) is an allohexaploid hybrid composed of three closely related diploid subgenomes (AABBDD, 2n=6x=42). For most genes, bread wheat therefore has three gene copies, referred to as homeolog ... -
Identification of growth regulators using cross-species network analysis in plants
Curci, Pasquale Luca; Zhang, Jie; Mähler, Niklas; Seyfferth, Carolin; Mannapperuma, Chanaka; Diels, Tim; Hautegem, Tom Van; Jonsen, David; Street, Nathaniel R.; Hvidsten, Torgeir Rhoden; Hertzberg, Magnus; Nilsson, Ove; Inzé, Dirk; Nelissen, Hilde; Vandepoele, Klaas (Peer reviewed; Journal article, 2022) -
Integration of absolute multi-omics reveals dynamic protein-to-RNA ratios and metabolic interplay within mixed-domain microbiomes
Delogu, Francesco; Kunath, Benoit Josef; Evans, PN; Arntzen, Magnus Øverlie; Hvidsten, Torgeir Rhoden; Pope, Phillip Byron (Peer reviewed; Journal article, 2020) -
Life-stage associated remodeling of lipid metabolism regulation in Atlantic salmon
Gillard, Gareth Benjamin; Harvey, Thomas Nelson; Gjuvsland, Arne Bjørke; Jin, Yang; Thomassen, Magny Sissel S.; Lien, Sigbjørn; Leaver, Michael; Torgersen, Jacob Seilø; Hvidsten, Torgeir Rhoden; Vik, Jon Olav; Sandve, Simen Rød (Journal article; Peer reviewed, 2018) -
Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification
Robertson, Fiona M; Gundappa, Manu Kumar; Grammes, Fabian; Hvidsten, Torgeir Rhoden; Redmond, Anthony K; Lien, Sigbjørn; Martin, Samuel AM; Holland, Peter WH; Sandve, Simen Rød; Macqueen, Daniel J (Journal article; Peer reviewed, 2017)