Browsing Brage NMBU by Author "Bohlin, Jon"
Now showing items 1-19 of 19
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A simple stochastic model to describe the evolutionover time of core genome SNP GC content inprokaryotes
Bohlin, Jon; Rose, Brittany; Brynildsrud, Ola Brønstad; De Blasio, Birgitte Freiesleben (Journal article, 2019) -
An EPIC predictor of gestational age and its application to newborns conceived by assisted reproductive technologies
Haftorn, Kristine Løkås; Lee, Yunsung; Denault, William Robert Paul; Page, Christian Magnus; Nustad, Haakon Egdetveit; Lyle, Robert; Gjessing, Håkon Kristian; Malmberg, Anni; Magnus, Maria Christine; Næss, Øyvind; Czamara, Darina; Räikkönen, Katri; Lahti, Jari; Magnus, Per Minor; Håberg, Siri Eldevik; Jugessur, Astanand; Bohlin, Jon (Peer reviewed; Journal article, 2021) -
An evolutionary analysis of genome expansion and pathogenicity in Escherichia coli
Bohlin, Jon; Brynildsrud, Ola Brønstad; Sekse, Camilla; Snipen, Lars (Journal article; Peer reviewed, 2014) -
Assessment of Coronavirus Disease 2019 Intervention Strategies in the Nordic Countries Using Genomic Epidemiology
Duchene, Sebastian; Featherstone, Leo; de Blasio, Birgitte Freiesleben; Holmes, Edward C.; Bohlin, Jon; Pettersson, John H.-O. (Peer reviewed; Journal article, 2022)We explored how the duration, size, and number of virus transmission clusters, defined as country-specific monophyletic groups in a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) phylogenetic tree, differed ... -
Benchmarking of phylogenetic approaches for molecular epidemiology of clonal populations of bacteria : a case study with Listeria monocytogenes from food industry
Fagerlund, Annette (Master thesis, 2021)Listeria monocytogenes is a foodborne pathogenic bacterium with a clonal population structure. It is widely distributed in natural environments and can establish and persist in food processing factories for years, making ... -
Characterization of Shiga toxin 2a encoding bacteriophages isolated from high-virulent O145:H25 Shiga toxin-producing Escherichia coli
Ramstad, Silje; Wasteson, Yngvild; Lindstedt, Bjørn-Arne; Taxt, Arne Michael; Bjørnholt, Jørgen; Brandal, Lin Cathrine T.; Bohlin, Jon (Peer reviewed; Journal article, 2021) -
Characterizing the virome of Ixodes ricinus ticks from northern Europe
Pettersson, John; Shi, Mang; Bohlin, Jon; Eldholm, Vegard; Brynildsrud, Ola Brønstad; Paulsen, Katrine Mørk; Andreassen, Åshild Kristine; Holmes, Edward C (Peer reviewed; Journal article, 2017) -
Effects of subclinical footpad dermatitis and emotional arousal on surface foot temperature recorded with infrared thermography in turkey toms (Meleagris gallopavo)
Moe, Randi Oppermann; Bohlin, Jon; Flø, Andreas Svarstad; Vasdal, Guro; Erlandsen, Henrik; Guneriussen, Eivind; Sjökvist, Elin Charlotte; Stubsjøen, Solveig Marie (Journal article; Peer reviewed, 2018) -
Evolution of Genomic Base Composition: From Single Cell Microbes to Multicellular Animals
Bohlin, Jon; Pettersson, John H.-O. (Journal article; Peer reviewed, 2019)Whole genome sequencing (WGS) of thousands of microbial genomes has provided considerable insight into evolutionary mechanisms in the microbial world. While substantially fewer eukaryotic genomes are available for analyses ... -
Experimental factors affecting the within- and between-individual variation of plantar foot surface temperatures in turkeys (Meleagris gallopovo) recorded with infrared thermography
Moe, Randi Oppermann; Flø, Andreas Svarstad; Bohlin, Jon; Vasdal, Guro; Erlandsen, Henrik; Guneriussen, Eivind; Sjökvist, Elin Charlotte; Stubsjøen, Solveig Marie (Journal article; Peer reviewed, 2018) -
Hot chicks, cold feet
Moe, Randi Oppermann; Bohlin, Jon; Flø, Andreas Svarstad; Vasdal, Guro; Stubsjøen, Solveig Marie (Journal article; Peer reviewed, 2017) -
In silico exploration of stx2a-positive (STEC) and stx-negative Escherichia coli (STEC-LST)
Sivanesan, Abira (Master thesis, 2018)Escherichia coli er en harmløs bakterie som naturlig sameksisterer med mennesker og dyr i tarmen. E. coli-genomet er dynamisk og kan skape store interne endringer (rekombinasjon), overføre plasmider (konjugasjon), tilegne ... -
Macrocirculatory Parameters and Oxygen Debt Indices in Pigs During Propofol Or Alfaxalone Anesthesia When Subjected to Experimental Stepwise Hemorrhage
Lervik, Andreas; Forr Toverud, Simen; Bohlin, Jon; Haga, Henning Andreas (Peer reviewed; Journal article, 2021) -
Nucleated red blood cells explain most of the association between DNA methylation and gestational age
Haftorn, Kristine Løkås; Denault, William Robert Paul; Lee, Yunsung; Page, Christian Magnus; Romanowska, Julia; Lyle, Robert; Næss, Øyvind Erik; Kristjansson, Dana; Magnus, Per Minor; Håberg, Siri Eldevik; Bohlin, Jon; Jugessur, Astanand (Peer reviewed; Journal article, 2023)Determining if specific cell type(s) are responsible for an association between DNA methylation (DNAm) and a given phenotype is important for understanding the biological mechanisms underlying the association. Our EWAS of ... -
Recognizing plasmid-reads by machine learning and K-mer statistics
Liland, Jens Rasmus (Master thesis, 2019)The aim of this project was to investigate to what extent some machine learning methods are able to classify chromosome reads from plasmid reads based on K-mer statistics. Both short Illumina HiSeq 2500 reads and medium-length ... -
A simple stochastic model to describe the evolutionover time of core genome SNP GC content inprokaryotes
Bohlin, Jon; Rose, Brittany; Brynildsrud, Ola Brønstad; De Blasio, Birgitte Freiesleben (Journal article, 2019) -
Statistical predictions with glmnet
Engebretsen, Solveig; Bohlin, Jon (Peer reviewed; Journal article, 2019) -
The microevolution of Renibacterium salmoninarum
Brynildsrud, Ola Brønstad (PhD Thesis;2015:50, Doctoral thesis, 2017-07-13)Renibacterium salmoninarum is the causative agent of bacterial kidney disease (BKD), a chronic infection of cultured and wild salmonids, which can result in acute morbidity or mortality or be a slowly progressive disease ... -
The nucleotide composition of microbial genomes indicates differential patterns of selection on core and accessory genomes
Bohlin, Jon; Eldholm, Vegard; Pettersson, John; Brynildsrud, Ola Brønstad; Snipen, Lars-Gustav (Journal article; Peer reviewed, 2017)Background: The core genome consists of genes shared by the vast majority of a species and is therefore assumed to have been subjected to substantially stronger purifying selection than the more mobile elements of the ...