• DRAM for distilling microbial metabolism to automate the curation of microbiome function 

      Shaffer, Michael; Borton, Mikayla A.; McGivern, Bridget B.; Zayed, Ahmed A.; Leanti La Rosa, Sabina; Solden, Lindsey M; Liu, Pengfei; Narrowe, Adrienne B.; Rodríguez-Ramos, Josué; Bolduc, Benjamin; Gazitúa, M. Consuelo; Daly, Rebecca A.; Smith, Garrett J.; Vik, Dean R.; Pope, Phillip Byron; Sullivan, Matthew B; Roux, Simon; Wrighton, Kelly C. (Peer reviewed; Journal article, 2020)
      Microbial and viral communities transform the chemistry of Earth's ecosystems, yet the specific reactions catalyzed by these biological engines are hard to decode due to the absence of a scalable, metabolically resolved, ...
    • IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses 

      Paez-Espino, D; Chen, IA; Palaniappan, K; Ratner, A.; Chu, K; Szeto, E; Pillay, M; Huang, J; Markowitz, VM; Nielsen, T.; Huntemann, M; Reddy, TBK; Georgios, PA; Sullivan, MB; Campbell, BJ; Chen, F; McMahon, K.; Hallam, SJ; Denef, V; Cavicchhioli, R; Caffrey, SM; Streit, WR; Webster, J; Handley, KM; Salekdeh, GH; Tsesmetzis, N; Setubal, JC; Pope, Phillip; Liu, WT; Rivers, AR; Ivanova, NN; Kyrpides, NC (Journal article; Peer reviewed, 2016)