Blar i Brage NMBU på forfatter "Snipen, Lars"
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A study of mechanisms involved in the pathogenicity of Enterococcus faecalis by DNA microarrays
Solheim, Margrete (PhD Thesis;2010:54, Doctoral thesis, 2010)Traditionally considered a harmless commensal of the mammalian gastrointestinal tract, Enterococcus faecalis now rank among the leading causes of nosocomial infections worldwide. Several genetic determinants enhancing the ... -
A systematic search for discriminating sites in the 16S ribosomal RNA gene
Vinje, Hilde; Almøy, Trygve; Liland, Kristian Hovde; Snipen, Lars (Journal article; Peer reviewed, 2014) -
An evolutionary analysis of genome expansion and pathogenicity in Escherichia coli
Bohlin, Jon; Brynildsrud, Ola Brønstad; Sekse, Camilla; Snipen, Lars (Journal article; Peer reviewed, 2014) -
Classification and quantification of the contents of fishmeal using hash-based classification algorithms on metagenomic sequence data
Ekeland, Halvor (Master thesis, 2022)With the abundance of sequence data and the development of effective computer algorithms, new practical applications using sequence data are possible, among the authentication of the contents of food and feed. This study ... -
Development of Liquid Array Diagnostic (LAD) technology for prediction of human gut microbiota composition and functionality
Hiseni, Pranvera (PhD Thesis;2022:13, Doctoral thesis, 2022)The microbial species residing in the human gut exercise vital functions for the host. They produce different metabolites that are crucial for human wellbeing. A variety of such molecules mediate signalling along the ... -
Effekt av hybridassembly på genomer med shuffloner og repeterte områder
Degnes, Maren-Helene Høie (Master thesis, 2019)Antibiotikaresistens spres mest effektivt mellom bakterier via konjugasjon, men konjugasjon forutsetter at bakteriene binder seg godt nok til hverandre. IncI1-plasmidet er et konjugativt plasmid og inneholder et område ... -
Evaluation of machine learning approaches for prediction of protein coding genes in prokaryotic DNA sequences
Sandvik, Yva Jacob (Master thesis, 2022)According to the National Human Genome Research Institute the amount of genomic data generated on a yearly basis is constantly increasing. This rapid growth in genomic data has led to a subsequent surge in the demand for ... -
Gut bacteria at 6 months of age are associated with immune cell status in 1-year-old children
Nilsen, Morten; Nygaard, Unni Cecilie; Brodin, Petter; Carlsen, Karin Cecilie Lødrup; Fredheim, Cecilie; Haugen, Guttorm Nils; Hedlin, Gunilla; Monceyron Jonassen, Christine; Jonsmoen, Unni Lise Albertsdottir; Lakshmikanth, Tadepally; Nordlund, Björn; Olin, Axel; Rehbinder, Eva Maria; Skjerven, Håvard O.; Snipen, Lars; Staff, Anne Cathrine; Söderhäll, Cilla; Vettukattil, Muhammad Riyas; Rudi, Knut (Peer reviewed; Journal article, 2023) -
HumGut: a comprehensive human gut prokaryotic genomes collection filtered by metagenome data
Hiseni, Pranvera; Rudi, Knut; Wilson, Robert Charles; Hegge, Finn Terje; Snipen, Lars (Peer reviewed; Journal article, 2021) -
In silico exploration of stx2a-positive (STEC) and stx-negative Escherichia coli (STEC-LST)
Sivanesan, Abira (Master thesis, 2018)Escherichia coli er en harmløs bakterie som naturlig sameksisterer med mennesker og dyr i tarmen. E. coli-genomet er dynamisk og kan skape store interne endringer (rekombinasjon), overføre plasmider (konjugasjon), tilegne ... -
Knowledge-based methods handling complex dependency structures : applications to gene expression data
Dørum, Guro (PhD Thesis;2011:46, Doctoral thesis, 2011)Microarray gene expression data are usually associated with a large number of correlated variables measured on few samples. This type of data typically contain high levels of noise, and the biological signals may be difficult ... -
Prokaryote classification : method development and novel insight in 16S ribosomal RNA-based classification
Vinje, Hilde (PhD Thesis;2016:95, Doctoral thesis, 2016)The main objective of this thesis is the improvement of prokaryotic classification based on the 16S ribosomal RNA. As a result of the shift in sequencing technology, generating enormous amounts of sequencing data and the ... -
Reduced metagenome sequencing for strain-resolution taxonomic profiles
Snipen, Lars; Angell, Inga-Leena; Rognes, Torbjørn; Rudi, Knut (Peer reviewed; Journal article, 2021)