Blar i Brage NMBU på forfatter "Snipen, Lars Gustav"
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Benchmarking of phylogenetic approaches for molecular epidemiology of clonal populations of bacteria : a case study with Listeria monocytogenes from food industry
Fagerlund, Annette (Master thesis, 2021)Listeria monocytogenes is a foodborne pathogenic bacterium with a clonal population structure. It is widely distributed in natural environments and can establish and persist in food processing factories for years, making ... -
Benchmarking of sequence-based machine learning methods for prediction of antibody polyreactivity
Mathisen, Ingvild Frøberg (Master thesis, 2022)Antibodies are of great importance as therapeutics and a prerequisite for their success is high specificity to a desired target. Some antibodies however, termed polyreactive, are able to recognize and react to a diverse ... -
Butyrate Levels in the Transition from an Infant-to an Adult-Like Gut Microbiota Correlate with Bacterial Networks Associated with Eubacterium Rectale and Ruminococcus Gnavus
Nilsen, Morten; Saunders, Carina Madelen; Angell, Inga Leena; Arntzen, Magnus Øverlie; Carlsen, Karin C. Lødrup; Carlsen, Kai-Håkon; Haugen, Guttorm; Hagen, Live Heldal; Carlsen, Monica Hauger; Hedlin, Gunilla; Jonassen, Christine M; Nordlund, Bjørn; Rehbinder, Eva Maria; Skjerven, Håvard Ove; Snipen, Lars Gustav; Staff, Anne Cathrine; Vettukattil, Riyas; Rudi, Knut (Peer reviewed; Journal article, 2020) -
DeepGene : gene finding based on upstream sequence data
Almestrand, Trude Haug (Master thesis, 2022)Genome annotation is a process of identifying functional elements along a genome. By correctly locating and finding the information stored within a sequence, knowledge about structural features and functional roles can be ... -
Fecal Microbiota Nutrient Utilization Potential Suggests Mucins as Drivers for Initial Gut Colonization of Mother-Child-Shared Bacteria
Nilsen, Morten; Lokmic, Asima; Angell, Inga Leena; Carlsen, Karin Cecilie Lødrup; Carlsen, Kai-Håkon; Haugen, Guttorm Nils; Hedlin, Gunilla; Jonassen, Christine M; Marsland, Benjamin J.; Nordlund, Björn; Rehbinder, Eva Maria; Schinagl, Carina Madelen; Skjerven, Håvard Ove; Snipen, Lars Gustav; Staff, Anne Cathrine; Söderhall, Cilla; Vettukattil, Muhammad Riyas; Rudi, Knut (Peer reviewed; Journal article, 2021) -
The GDR : a novel approach to detect large-scale genomic sequence patterns
Bull, Nora Borge (Master thesis, 2021)Utvikling av ny sekvenseringsteknologi de to siste tiårene har tillatt dypere dykk ned i de biomolekylære aspektene ved menneskets oppskrift. Hel-genom data fra flere hundre tusen mennesker er allerede tilgjengelig, men ... -
Genomanalyse av Salmonella enterica subsp. enterica serovar Typhimurium i Norge
Obstfelder, Andrea (Master thesis, 2022)Salmonella enterica subspecies enterica serovar Typhimurium, referred to as S. Typhimurium in this master`s thesis, is one of the most common pathogenic serovariants of Salmonella spp. S. Typhimurium has been isolated in ... -
Human gut microbiome : GA-map coverage and genomic categories in HumGut
Johansen, Iben Amalie Lund (Master thesis, 2023)Microorganisms in the gut are proven to affect health in multiple ways, and they have been studied extensively for the last decade. HumGut is a database containing microorganisms from the healthy human gut. The company ... -
Questioning the Quality of 16S rRNA Gene Sequences Derived From Human Gut Metagenome-Assembled Genomes
Hiseni, Pranvera; Snipen, Lars Gustav; Wilson, Robert Charles; Furu, Kari; Rudi, Knut (Peer reviewed; Journal article, 2022)